HsaEX6063738 @ hg19
Exon Skipping
Gene
ENSG00000198870 | C9orf96
Description
chromosome 9 open reading frame 96 [Source:HGNC Symbol;Acc:28669]
Coordinates
chr9:136265541-136269172:+
Coord C1 exon
chr9:136265541-136265657
Coord A exon
chr9:136268824-136268952
Coord C2 exon
chr9:136269044-136269172
Length
129 bp
Sequences
Splice sites
3' ss Seq
CATCCCTGTCCTCGTTCCAGGTA
3' ss Score
11
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
GTCTGCCGTGGCCCCCGGAGCTGGTGGAGGTGGTGGTCACGACCATGGAGCTACATGACAGGGTCCTCGATGTCCAGCTGTGTGCCTGCTCCCTGCTGCTGCACCTCCTGGGCCAAG
Seq A exon
GTATCATTGTGAACAAGGCCCCCTTGGAGAAGGTCCCGGACCTCATCAGCCAGGTGTTGGCCACCTACCCTGCGGATGGGGAAATGGCAGAAGCCAGCTGCGGAGTCTTCTGGCTGCTGTCCCTGCTGG
Seq C2 exon
GCTGCATCAAGGAGCAGCAGTTTGAACAAGTGGTGGCGCTGCTCCTGCAAAGCATCCGGCTGTGCCAGGACAGAGCCCTGCTGGTGAACAATGCCTACCGGGGACTGGCCAGCCTGGTGAAGGTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198870-'17-21,'17-20,20-21=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.009 C2=0.000
Domain overlap (PFAM):
C1:
PF050048=IFRD=PU(17.5=52.5)
A:
PF050048=IFRD=PD(5.0=13.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGAGCTGGTGGAGGTG
R:
CCTTCACCAGGCTGGCCAG
Band lengths:
226-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)