GgaEX1056126 @ galGal4
Exon Skipping
Gene
ENSGALG00000003175 | STKLD1
Description
serine/threonine kinase-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28669]
Coordinates
chr17:6897712-6899424:+
Coord C1 exon
chr17:6897712-6897840
Coord A exon
chr17:6898256-6898384
Coord C2 exon
chr17:6899296-6899424
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTTATGGTAATTTAGAGA
3' ss Score
4.79
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
AAGTTGTTGCGGAAAATCTAAGGAAAGCTGGATTAACTTCAGATCTTCTGTCAATTTTATGCAACTTTATTCATAATGAGCAGATCTGCCACACTAGCTGTGCAGTTCTCTGGAGCTTGGCTGTGAGTG
Seq A exon
AGAACAATGTAGACCAAGTAATGCTGCAAAGTGCTGTCCCCGTTATCACCGCAGTCATTCAAGAGCACCTCCAGAATGGAGCAGTTCTGAAGTCAGCTTGCTCAGCTTTGTGGGCGCTGTCACTGCAAG
Seq C2 exon
GTTTTTTAACTGAAAATGACTATGAGCCCACAACAGTGCTTCTGATGGATGCACTCAGGATGAACCTGGAAAAACCAATGCTGGTGAATAATACCTGCCTGGCATTAGCAAGCCTTCTAAGACTATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003175-'18-22,'18-20,19-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGCGGAAAATCTAAGGAAAGC
R:
AGAAGGCTTGCTAATGCCAGG
Band lengths:
243-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]