MmuEX6099785 @ mm10
Exon Skipping
Gene
ENSMUSG00000049897 | Stkld1
Description
serine/threonine kinase-like domain containing 1 [Source:MGI Symbol;Acc:MGI:2685557]
Coordinates
chr2:26950554-26951750:+
Coord C1 exon
chr2:26950554-26950682
Coord A exon
chr2:26951420-26951548
Coord C2 exon
chr2:26951622-26951750
Length
129 bp
Sequences
Splice sites
3' ss Seq
CATCTTTGTCCTGGGTCTAGTTG
3' ss Score
5.83
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GACAGATCTCAGAAGAGCTGGAAGAGGAGGGGTTGTTTCAGCTTGCCCAAGAGAACCTGGAGCACTTCCAAGAGGACAGGGACATCTGCCTCTCTATCCTGAGCCTGCTCTGGTCCCTCCTGGTAGATG
Seq A exon
TTGTCACTGTGGACAAAGAGCCCTTGGAGCAGCTCTCTGGCATGGTCACCTGGGTGCTGGCTACTCATCCGGAGGACGTGGAAATAGCAGAGGCTGGCTGTGCGGTGCTCTGGCTGCTGTCCTTGTTGG
Seq C2 exon
GCTGCATAAAGGAGAGTCAGTTTGAGCAGGTGGTAGTGCTGCTCCTGAGAAGCATCCAGCTGTGCCCTGGCAGAGTACTGCTGGTGAACAATGCATTCCGTGGCTTGGCCAGCCTCGCAAAGGTGTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049897-'19-29,'19-23,21-29=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAAGAGCTGGAAGAGGAGG
R:
CTTTGCGAGGCTGGCCAAG
Band lengths:
243-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types