GgaEX1059804 @ galGal3
Exon Skipping
Gene
ENSGALG00000004110 | TOMM34
Description
NA
Coordinates
chr20:5188868-5189647:+
Coord C1 exon
chr20:5188868-5188997
Coord A exon
chr20:5189071-5189170
Coord C2 exon
chr20:5189495-5189647
Length
100 bp
Sequences
Splice sites
3' ss Seq
CACCGCTGTGTGCCGCGCAGGGG
3' ss Score
6.79
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AGCCCCGCGCGGCCCGGGATGGAGAGCGCCGGCGATCTGCGGCGCGCCGGCAACGAGGAGTTCCGCCGCGGGCAGTACGGGGCGGCCGCGGAGCTGTACAGCCGCGCGCTGGCGGTGCTGGAGGACGCAG
Seq A exon
GGGAAGCCGCCGCCGAGGAGCGCAGCGTGCTGCTGGCCAACCGCGCCGCCTGCCAGCTGCGGGACGGCGCCTGCCGGGGCTGCGTCGCCGACTGCTGCAG
Seq C2 exon
CGCGCTCAGCCTGACCCCGTTTGCCATCAAGCCTCTGCTCAGGAGAGCGGCTGCCTATGAGGCCCTGGAGAGCTTTGCGTTGGCCTACGTGGACTATAAGACCGCACTGCAGGTGGACTGCTCCATACAGGCGGCCCACGATGGGGTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004110-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.318 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(47.4=81.8)
A:
PF134141=TPR_11=FE(43.4=100)
C2:
PF134141=TPR_11=PD(7.9=11.5),PF0051523=TPR_1=WD(100=59.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACGAGGAGTTCCGCC
R:
CTGTTGACCCCATCGTGG
Band lengths:
234-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]