BtaEX6066792 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003256 | TOMM34
Description
translocase of outer mitochondrial membrane 34 [Source:HGNC Symbol;Acc:HGNC:15746]
Coordinates
chr13:74082476-74088187:-
Coord C1 exon
chr13:74088007-74088187
Coord A exon
chr13:74083737-74083836
Coord C2 exon
chr13:74082476-74082628
Length
100 bp
Sequences
Splice sites
3' ss Seq
TTCTGCTTCCTCCGGGGCAGGTT
3' ss Score
8.38
5' ss Seq
TTCGTGAGC
5' ss Score
3.45
Exon sequences
Seq C1 exon
CCGGGAACTGTAGCGCCCCCCACCCCGCCCCGAGTTTACCGGTCCAGCCCCAGGATGGCCCCTATACCCCCGGCATCAGTGGAGGAGCTCCGCACCACCGGCAACCAGAGCTTCCGCAACGGCCAGTTCGCCGAGGCCGCCACACTCTACAGCCGCGCGCTGCGGATGTTGCAGGAACAAG
Seq A exon
GTTCTTCAGATCCAGAAAAAGAAAGTGTTCTCTACTCCAACCGAGCAGCCTGCCACTTGAAGGACGGGAACTGCATCGACTGCATCAAGGACTGCACTTC
Seq C2 exon
AGCACTGGCCCTGGTTCCCTTCAGCCTGAAGCCCCTGCTGCGGCGAGCATCGGCCTATGAGGCCCTGGAGAAGTACCCTCTGGCCTACGTGGACTACGTGACCGTGCTGCAGATTGATGACAGCGTGATGTCAGCCTTGGAAGGCAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003256-'1-2,'1-0,4-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.384 A=0.162 C2=0.016
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(47.4=83.7)
A:
PF134141=TPR_11=FE(43.4=100)
C2:
PF134141=TPR_11=PD(7.9=11.5),PF0051523=TPR_1=WD(100=61.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGATGGCCCCTATACCCC
R:
TCATCAATCTGCAGCACGGTC
Band lengths:
251-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]