GgaEX1059804 @ galGal4
Exon Skipping
Gene
ENSGALG00000004110 | TOMM34
Description
translocase of outer mitochondrial membrane 34 [Source:HGNC Symbol;Acc:HGNC:15746]
Coordinates
chr20:5569460-5570242:+
Coord C1 exon
chr20:5569460-5569592
Coord A exon
chr20:5569666-5569765
Coord C2 exon
chr20:5570090-5570242
Length
100 bp
Sequences
Splice sites
3' ss Seq
CACCGCTGTGTGCCGCGCAGGGG
3' ss Score
6.79
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CACAGCCCCGCGCGGCCCGGGATGGAGAGCGCCGGCGATCTGCGGCGCGCCGGCAACGAGGAGTTCCGCCGCGGGCAGTACGGGGCGGCCGCGGAGCTGTACAGCCGCGCGCTGGCGGTGCTGGAGGACGCAG
Seq A exon
GGGAAGCCGCCGCCGAGGAGCGCAGCGTGCTGCTGGCCAACCGCGCCGCCTGCCAGCTGCGGGACGGCGCCTGCCGGGGCTGCGTCGCCGACTGCTGCAG
Seq C2 exon
CGCGCTCAGCCTGACCCCGTTTGCCATCAAGCCTCTGCTCAGGAGAGCGGCTGCCTATGAGGCCCTGGAGAGCTTTGCGTTGGCCTACGTGGACTATAAGACCGCACTGCAGGTGGACTGCTCCATACAGGCGGCCCACGATGGGGTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004110-'1-2,'1-0,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.344 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(47.4=80.0)
A:
PF134141=TPR_11=FE(43.4=100)
C2:
PF134141=TPR_11=PD(7.9=11.5),PF0051523=TPR_1=WD(100=59.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACGAGGAGTTCCGCC
R:
CTGTTGACCCCATCGTGG
Band lengths:
234-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]