HsaEX6078321 @ hg19
Exon Skipping
Gene
ENSG00000025772 | TOMM34
Description
translocase of outer mitochondrial membrane 34 [Source:HGNC Symbol;Acc:15746]
Coordinates
chr20:43583709-43589127:-
Coord C1 exon
chr20:43588848-43589127
Coord A exon
chr20:43585027-43585126
Coord C2 exon
chr20:43583709-43583861
Length
100 bp
Sequences
Splice sites
3' ss Seq
TCCCCACTCTATCTGGGCAGGTT
3' ss Score
9.66
5' ss Seq
TTCGTAAGT
5' ss Score
9.77
Exon sequences
Seq C1 exon
GCTCCGGGCCTCCAGGTCTCGCAGGCCCCGCCCCCTCGCCGCGGGTTCGCTGTTGGGCGGAGATATTCGCCGCCGGCGCTTGCGCCCGGAAGGTGTGCCGCACCACACGGGGGAGGAAGGAAGGAGCTCCCAACTCGCCGGCCTGGCCACGGGATGGCCCCCAAATTCCCAGACTCTGTGGAGGAGCTCCGCGCCGCCGGCAATGAGAGTTTCCGCAACGGCCAGTACGCCGAGGCCTCCGCGCTCTACGGCCGCGCGCTGCGGGTGCTGCAGGCGCAAG
Seq A exon
GTTCTTCAGACCCAGAAGAAGAAAGTGTTCTCTACTCCAACCGAGCAGCATGTCACTTGAAGGATGGAAACTGCAGAGACTGCATCAAAGATTGCACTTC
Seq C2 exon
AGCACTGGCCTTGGTTCCCTTCAGCATTAAGCCCCTGCTGCGGCGAGCATCTGCTTATGAGGCTCTGGAGAAGTACCCTATGGCCTATGTTGACTATAAGACTGTGCTGCAGATTGATGATAATGTGACGTCAGCCGTAGAAGGCATCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000025772-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(47.4=83.7)
A:
PF134141=TPR_11=FE(43.4=100)
C2:
PF134141=TPR_11=PD(7.9=11.5),PF0051523=TPR_1=WD(100=65.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAAGGAAGGAGCTCCCAA
R:
GGGTACTTCTCCAGAGCCTCA
Band lengths:
246-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)