DreEX0080530 @ danRer10
Exon Skipping
Gene
ENSDARG00000001557 | tomm34
Description
translocase of outer mitochondrial membrane 34 [Source:ZFIN;Acc:ZDB-GENE-030131-2081]
Coordinates
chr6:52231873-52234318:-
Coord C1 exon
chr6:52234182-52234318
Coord A exon
chr6:52232106-52232205
Coord C2 exon
chr6:52231873-52232025
Length
100 bp
Sequences
Splice sites
3' ss Seq
TGTAACCATTCTGTTCGCAGGTC
3' ss Score
10.5
5' ss Seq
GGCGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
TGTTAACATGCCTCAGAAGCGGCGCACGCAGTCGTGGACGGATCTCAAACAAGCCGGTAACGAGTGCTTCAAAGCGGGTCAGTATGGAGAAGCGGTGACCCTCTACAGCCAGGCCATCCAGCAGCTGGAGAAATCTG
Seq A exon
GTCAGAAGAAAACTGAAGATCTGGGTATTTTGTACTCAAACAGGGCCGCCAGTTACCTGAAAGATGGAAACTGCAATGAATGCATTAAAGACTGCACGGC
Seq C2 exon
GTCGCTTGACTTGGTTCCATTTGGATTTAAAGCTCTGCTACGCCGTGCAGCAGCTTTTGAAGCTTTGGAGAGATACCGACAAGCATATGTGGACTACAAAACAGTTTTACAGATCGACTGGAACATACCAGCTGCTCACGATGGAGTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001557-'1-2,'1-1,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.205 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(46.7=79.5)
A:
PF134141=TPR_11=FE(44.0=100)
C2:
PF134141=TPR_11=PD(8.0=11.5),PF0051523=TPR_1=WD(100=59.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACGGATCTCAAACAAGCC
R:
CCATCGTGAGCAGCTGGTATG
Band lengths:
247-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]