RnoEX0092721 @ rn6
Exon Skipping
Gene
ENSRNOG00000029799 | Tomm34
Description
translocase of outer mitochondrial membrane 34 [Source:RGD Symbol;Acc:1309029]
Coordinates
chr3:160459405-160465143:-
Coord C1 exon
chr3:160464998-160465143
Coord A exon
chr3:160460721-160460820
Coord C2 exon
chr3:160459405-160459557
Length
100 bp
Sequences
Splice sites
3' ss Seq
TCTTGCCTCCACCTGGGCAGGTT
3' ss Score
7.44
5' ss Seq
TTCGTAAGT
5' ss Score
9.77
Exon sequences
Seq C1 exon
GTTTACCAGCCCGCCCGGCATGGCCCCCAAAGTCTCGGACTCTGTGGAACAGCTCCGCGCTGCCGGCAACCAGAACTTCCGCAATGGCCAGTACGGCGAGGCCTCCGCGCTGTACGAGCGCGCACTGCGGCTGCTGCAGGCGCGAG
Seq A exon
GTTCTGCAGACCCAGAAGAAGAGAGTGTTCTGTACTCCAACCGTGCAGCGTGCTACTTGAAGGATGGGAATTGCACAGACTGCATCAAAGATTGCACTTC
Seq C2 exon
AGCACTGGCCTTGGTTCCCTTCAGCATCAAGCCCTTGCTGCGAAGAGCATCTGCATATGAAGCTCTGGAGAAGTACTCCCTGGCCTATGTCGACTATAAGACTGTGCTGCAGATCGACAACAGTGTGGCATCAGCCCTGGAAGGCATCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029799-'1-4,'1-2,4-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(47.4=83.7)
A:
PF134141=TPR_11=FE(43.4=100)
C2:
PF134141=TPR_11=PD(7.9=11.5),PF0051523=TPR_1=WD(100=63.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAAAGTCTCGGACTCTGT
R:
CCACACTGTTGTCGATCTGCA
Band lengths:
250-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]