GgaEX1061524 @ galGal3
Exon Skipping
Gene
ENSGALG00000002521 | F1P543_CHICK
Description
NA
Coordinates
chr12:2268487-2269036:-
Coord C1 exon
chr12:2268956-2269036
Coord A exon
chr12:2268733-2268888
Coord C2 exon
chr12:2268487-2268652
Length
156 bp
Sequences
Splice sites
3' ss Seq
GCAGCGGCTGTGCCTCGCAGGTG
3' ss Score
5.47
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
Exon sequences
Seq C1 exon
AGGGGGTCCCGCTACGACGGGCAGATTGCCGTGTTCGGGGCCGACTTCCAGGAGGAGCTGGGCCGCCAGAAGTACTTCGTG
Seq A exon
GTGGGAGCCGGCGCCATCGGCTGCGAGCTGCTGAAGAACTTTGCCATGATGGGGCTGGCAGCGGGGCCGGGCGGGGACATCACCGTCACCGACATGGACACGATCGCACGCTCCAACCTGCACCGGCAGCTTCTGTTCCGTGAGGCTGACGTGGGG
Seq C2 exon
AAGCCGAAGGCGGAGGTGGCTGCAGCCGCTGTGCGGCTCATCAACCCGGACATCAAAGTGACAGCGCACCAGGCTCAGCTGGGCCCCGGCACCGAGAAGCTCTTTGGGAGCACCTTCTTTCGGCGGCTGGACGGCGCTGTCAGTGCCCTGGACACGCTGACGGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002521-'10-13,'10-12,11-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0089916=ThiF=PU(4.1=22.2)
A:
PF0089916=ThiF=FE(35.2=100)
C2:
PF0089916=ThiF=FE(37.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTACGACGGGCAGATTG
R:
CCGTCAGCGTGTCCAGGG
Band lengths:
235-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]