DreEX6080088 @ danRer10
Exon Skipping
Gene
ENSDARG00000037559 | uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2009]
Coordinates
chr23:20728017-20729630:+
Coord C1 exon
chr23:20728017-20728097
Coord A exon
chr23:20729196-20729348
Coord C2 exon
chr23:20729465-20729630
Length
153 bp
Sequences
Splice sites
3' ss Seq
GTGACCCTTTCTGTGTTCAGGTT
3' ss Score
10.46
5' ss Seq
ACGGTACGA
5' ss Score
9.65
Exon sequences
Seq C1 exon
AGGAACTGCCGGTATGACGGCCAGATTGCCGTCTTTGGGTCCAAGCTGCAGGAGCTGTTAGCCAAGCAGAGATATTTTCTG
Seq A exon
GTTGGTGCTGGAGCCATTGGCTGTGAGCTGCTGAAGAACTTTGCTATGATGGGCTTGGCCAGTGGTGAAGGAGAGGTCATAGTCACTGACATGGACACCATTGAGAAGTCCAATCTCAATCGACAGTTCCTCTTCAGACCCTGGGATGTCACG
Seq C2 exon
AAGATGAAGAGTGAGACTGCTGCTGCGGCAGTGAAGCAGATGAACCCGTCAGTCCGTATCACTGGTCACCAGAACCGTGTGGGACCGGACACGGAGAAGGTCTATGATGATGACTTTTTTGAATGCCTTGATGGAGTGGCAAATGCTCTTGACAATGTAGATGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037559-'24-21,'24-20,25-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.134
Domain overlap (PFAM):
C1:
PF0089916=ThiF=PU(4.2=22.2)
A:
PF0089916=ThiF=FE(34.7=100)
C2:
PF0089916=ThiF=FE(38.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAACTGCCGGTATGACG
R:
GGGCATCTACATTGTCAAGAGCA
Band lengths:
247-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]