MmuEX6043824 @ mm10
Exon Skipping
Gene
ENSMUSG00000001924 | Uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:MGI Symbol;Acc:MGI:98890]
Coordinates
chrX:20672435-20675751:+
Coord C1 exon
chrX:20672435-20672515
Coord A exon
chrX:20672816-20672971
Coord C2 exon
chrX:20675586-20675751
Length
156 bp
Sequences
Splice sites
3' ss Seq
TCTCCTTGGCTGTTTCTTAGGTG
3' ss Score
8.57
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
Exon sequences
Seq C1 exon
CGTCAGAACCGTTACGATGGGCAGGTAGCTGTATTTGGGTCAGACTTTCAGGAGAAGCTGAGCAAGCAAAAGTACTTCCTG
Seq A exon
GTGGGTGCAGGGGCCATTGGCTGTGAATTGCTCAAGAACTTTGCCATGATTGGGCTGGGTTGTGGAGAGGGTGGAGAGGTCGTGGTCACAGACATGGACACCATTGAGAAATCAAATCTGAACCGACAGTTTCTCTTCCGGCCCTGGGATGTCACG
Seq C2 exon
AAGTTAAAGTCTGACACGGCCGCTGCAGCTGTGCGCCAGATGAATCCTTACATCCAGGTGACAAGCCACCAGAACCGTGTAGGTCCTGACACTGAGCGCATCTATGATGATGATTTCTTCCAAAATTTGGATGGTGTGGCCAATGCTCTGGACAACATAGATGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001924-'40-33,'40-30,41-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.054
Domain overlap (PFAM):
C1:
PF0089916=ThiF=PU(4.1=22.2)
A:
PF0089916=ThiF=FE(35.2=100)
C2:
PF0089916=ThiF=FE(37.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCAGAACCGTTACGATGGG
R:
GGGCATCTATGTTGTCCAGAGC
Band lengths:
247-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types