RnoEX0095580 @ rn6
Exon Skipping
Gene
ENSRNOG00000019164 | Uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:RGD Symbol;Acc:1359327]
Coordinates
chrX:1730122-1733065:-
Coord C1 exon
chrX:1732985-1733065
Coord A exon
chrX:1732722-1732877
Coord C2 exon
chrX:1730122-1730287
Length
156 bp
Sequences
Splice sites
3' ss Seq
TCTTCTTGGTCGTTTCTTAGGTG
3' ss Score
9.23
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
Exon sequences
Seq C1 exon
CGTCAGAACCGTTATGATGGGCAGGTAGCTGTATTTGGCTCAGACCTTCAAGAGAAGCTGGGCAAGCAAAAGTACTTCCTG
Seq A exon
GTGGGTGCAGGGGCCATTGGCTGTGAATTGCTCAAGAACTTTGCCATGATTGGGTTAGGCTGTGGAGAGGGTGGAGAGGTCGTGGTCACAGACATGGACACCATTGAGAAATCGAATCTGAACCGACAGTTTCTTTTCCGGCCCTGGGATGTCACG
Seq C2 exon
AAGTTAAAGTCTGACACGGCCGCTGCAGCTGTGCGACAGATGAATCCTTACATCCAGGTGACAAGCCACCAGAACCGTGTAGGCCCTGACACGGAGCGCATCTATGATGATGATTTTTTCCAAAATTTGGATGGTGTGGCCAATGCACTGGACAATGTAGATGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019164-'27-20,'27-18,28-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.054
Domain overlap (PFAM):
C1:
PF0089916=ThiF=PU(4.1=22.2)
A:
PF0089916=ThiF=FE(35.2=100)
C2:
PF0089916=ThiF=FE(37.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACCGTTATGATGGGCAGG
R:
GGCATCTACATTGTCCAGTGCA
Band lengths:
242-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]