BtaEX6006708 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016764 | UBA1
Description
Bos taurus ubiquitin-like modifier activating enzyme 1 (UBA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102477]
Coordinates
chrX:90840122-90842525:+
Coord C1 exon
chrX:90840122-90840202
Coord A exon
chrX:90840563-90840718
Coord C2 exon
chrX:90842360-90842525
Length
156 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTGGTTGTCTTCTAGGTG
3' ss Score
11.67
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
CGCCAGAACCGTTATGATGGGCAGGTAGCTGTATTTGGCTCAGACCTGCAGGAGAGGTTGGGCAAGCAGAAGTACTTCCTG
Seq A exon
GTGGGCGCAGGGGCCATTGGCTGTGAACTGCTCAAGAACTTTGCCATGATTGGGCTGGGCTGTGCAGAAGATGGAGAAATTGTTGTCACAGACATGGACACCATTGAGAAGTCAAATTTGAACAGACAGTTTCTGTTCCGGCCCTGGGATGTCACT
Seq C2 exon
AAATTAAAGTCTGACACAGCTGCTGCAGCTGTGCGCCAGATGAATCCTCATATCCGAGTGACAAGCCACCAGAACCGTGTAGGTCCTGACACTGAGCGCATCTATGATGATGATTTCTTCCAAAACCTGGATGGTGTAACCAATGCCCTGGATAATGTGGATGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016764-'27-20,'27-19,28-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.179
Domain overlap (PFAM):
C1:
PF0089916=ThiF=PU(4.1=22.2)
A:
PF0089916=ThiF=FE(35.2=100)
C2:
PF0089916=ThiF=FE(37.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCAGAACCGTTATGATGGG
R:
GGCATCCACATTATCCAGGGC
Band lengths:
246-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]