MmuEX6068768 @ mm9
Exon Skipping
Gene
ENSMUSG00000032596 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:MGI Symbol;Acc:MGI:1349462]
Coordinates
chr9:107880796-107881352:+
Coord C1 exon
chr9:107880796-107880876
Coord A exon
chr9:107880957-107881112
Coord C2 exon
chr9:107881187-107881352
Length
156 bp
Sequences
Splice sites
3' ss Seq
AAGACTGTTTCTGTCACCAGGTG
3' ss Score
8.51
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
AGAAACTGCCGATACGATGGGCAAATTGCTGTGTTTGGAACTGATCTTCAAGAGAAACTGAGTGACCAACACTACCTCTTG
Seq A exon
GTGGGTGCTGGTGCCATTGGCTGTGAGATGCTCAAAGTCTTTGCCCTAGTGGGCCTCGGAGTTAGGGCGAATGGAGGTGTGACTGTTGCTGACATGGATTACATAGAACGCTCCAACCTCAGCAGGCAGTTCCTCTTCAGGCCCAAGGATGTTAGA
Seq C2 exon
AGGCCCAAGGCAGAGGTGGCCGCCGCAGCAGCCCATCGTCTCAACCCAGACCTACGAGCGACTCCATATACCTGCCCACTGGATCCCACCACAGAGGATATCTACGATGACAGCTTTTTCTCCAGGGTGAACGGTGTTGTTGCTGCTTTGGACAGCTTCCAGGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032596-'10-12,'10-11,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.036
Domain overlap (PFAM):
C1:
PF0089916=ThiF=PU(4.1=22.2)
A:
PF0089916=ThiF=FE(35.2=100)
C2:
PF0089916=ThiF=FE(37.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAACTGCCGATACGATGGG
R:
GCTGTCCAAAGCAGCAACAAC
Band lengths:
237-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: