RnoEX6037551 @ rn6
Exon Skipping
Gene
ENSRNOG00000029195 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:RGD Symbol;Acc:1308323]
Coordinates
chr8:116757082-116757644:+
Coord C1 exon
chr8:116757082-116757162
Coord A exon
chr8:116757242-116757397
Coord C2 exon
chr8:116757479-116757644
Length
156 bp
Sequences
Splice sites
3' ss Seq
AAGATTCCTCCTGCCAGCAGGTA
3' ss Score
5.39
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
AGAAACTGCCGATACGACGGGCAAATTGCTGTGTTCGGGACTGGTTTTCAGGAGAAACTGAGCTACAAACACTACCTCTTG
Seq A exon
GTAGGTGCTGGTGCCATTGGCTGTGAGATGCTCAAAGGTTTTGCCCTAGTGGGCCTGGGAGTTAGGGATAATGGCGGTGTGACAATTGCTGACATGGACCACGTAGAACGCTCCAACCTCAGCCGGCAGTTCCTCTTCAGGCCCAAGGACACTGGG
Seq C2 exon
AGGCCCAAGGCAGAGGTGGCTGCAGAGGCAGCCCATCGCCTAAACCCAGACCTGCAAGTGACTTCACATACCTGCCCTCTGGATCCCACCACAGAGGACATCTATGACGACGACTTCTTCTCCAGGGTGGACGGCGTTGTTGCTGCTTTGGACAGTTTCCAGGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029195-'13-19,'13-18,14-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.143
Domain overlap (PFAM):
C1:
PF0089916=ThiF=PU(4.1=22.2)
A:
PF0089916=ThiF=FE(35.2=100)
C2:
PF0089916=ThiF=FE(37.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAACTGCCGATACGACG
R:
CTGTCCAAAGCAGCAACAACG
Band lengths:
236-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]