DreEX6024350 @ danRer10
Exon Skipping
Gene
ENSDARG00000061222 | uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:ZFIN;Acc:ZDB-GENE-121120-4]
Coordinates
chr6:52962329-52964807:+
Coord C1 exon
chr6:52962329-52962409
Coord A exon
chr6:52964216-52964371
Coord C2 exon
chr6:52964642-52964807
Length
156 bp
Sequences
Splice sites
3' ss Seq
TCTAAATTTCAAATGTTCAGGTT
3' ss Score
5.29
5' ss Seq
GGGGTAAAA
5' ss Score
2.56
Exon sequences
Seq C1 exon
AGAGACAGCCGATATGATGGCCAGATTGCTGTGTTTGGATCTGATTTTCAAAACAAACTGAAGAAGCAAAAGTATTTTCTG
Seq A exon
GTTGGAGCTGGAGCAATTGGTTGTGAGCTGCTGAAGAACTTTGCTCTGATTGGTCTGGGTGCAGGAGAGGGCGGGAGCATTACTGTGACTGACATGGACTCCATCGAGCGATCAAATCTGAATCGACAGTTTCTGTTCCGCTCTCAGGACATTGGG
Seq C2 exon
AGGCCGAAGTCTGAGGCAGCGGCAGAAGCTGTTAAAGAGATGAACCCTTTCATGAACATCATTGCTCAGCAGAACCGTGTGTGTGCAGAGACGGAGGAGGTTTACACACATTCATTCTACACTGGTCTGGATGGTGTGGCTGCAGCGCTGGATAATGTAGATGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061222-'12-12,'12-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.036
Domain overlap (PFAM):
C1:
PF0089916=ThiF=PU(4.1=22.2)
A:
PF0089916=ThiF=FE(35.2=100)
C2:
PF0089916=ThiF=FE(37.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCCGATATGATGGCCAG
R:
AGCATCTACATTATCCAGCGCTG
Band lengths:
243-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]