GgaEX1061530 @ galGal4
Exon Skipping
Gene
ENSGALG00000002521 | UBA7
Description
ubiquitin-like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:HGNC:12471]
Coordinates
chr12:2433808-2434824:-
Coord C1 exon
chr12:2434675-2434824
Coord A exon
chr12:2434518-2434674
Coord C2 exon
chr12:2433808-2433942
Length
157 bp
Sequences
Splice sites
3' ss Seq
GCGCCCGCCGTGCCCCGCAGGTT
3' ss Score
8.61
5' ss Seq
CAGGTACGG
5' ss Score
10.88
Exon sequences
Seq C1 exon
CCGGACGGGGCGGGGCGGGGCGCGGCGCGGCGGGGCGGGGCGGCGGCATGGCGGGCGCGCGCTACTCCCGGCAGCTGTGCGTGCGGGGCCGCGGGCGGCGGGGTCCGAGCGGCCGCCTTCCTGCCGCTGAGCGCCCGCCGTGCCCCGCAG
Seq A exon
GTTGGTGCTGGGCGGCGGCGGGCGGAGGCTGCGGGAGGCCGCGGTGCTCGTGGGGGGGCTGCGCGGGGTCGGAGCGCAGGCAGCGGCAGCACTGGTGCTGGCGGGGGCGCGGAGGGTCGTCCTGCACGAGAGCGGCGCGGCACCAGGCGGGGTGCAG
Seq C2 exon
TTCCTCCAGGGGGAGCGCGGTGTGGGCCGGAACCGTGCTGAGGTGTCCCAGCAGCTGCTGGCCGCACTGAACCCTGATGTGGAGGTGTCGGTGCACCCCGGGGAGCTGTCGGAGGAGTTCCTCGCTGCATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002521_CASSETTE3
Average complexity
S
Mappability confidence:
100%=50=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0089916=ThiF=PU(31.8=77.4)
C2:
PF0089916=ThiF=FE(34.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTACTCCCGGCAGCTG
R:
CTGGAATGCAGCGAGGAAC
Band lengths:
226-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]