BtaEX0038753 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012335 | UBA7
Description
Bos taurus ubiquitin-like modifier activating enzyme 7 (UBA7), mRNA. [Source:RefSeq mRNA;Acc:NM_001012284]
Coordinates
chr22:50991902-50992536:+
Coord C1 exon
chr22:50991902-50992041
Coord A exon
chr22:50992126-50992294
Coord C2 exon
chr22:50992402-50992536
Length
169 bp
Sequences
Splice sites
3' ss Seq
CTCTTTCTTCCCGCCCACAGGTA
3' ss Score
13.03
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TCCTGTTTGCACTGGCCACTGCTGGGCACTGGCTCCTGCTGGCATTGCCTCCTGTCTACAAGCCCTGCAGCCCCGGGCCTCAGGATGGATACCCTGGAGACCTCCAAGTTGCTGGATAAGGAGCTATACTCACGGCAGCT
Seq A exon
GTATGTGCTGGGCTTGCCCGCCATGCAGAGAATTCAGGGAGCCAAGGTGCTGCTGTCTGGCCTGCAGGGCCTGGGGGCTGAGGTGGCCAAAAACTTGGTCCTGATGGGCGTGGGCAGCCTCACTCTCCATGATCCCCACCCTACTTGCTGGTCTGACCTGGCTGCCCAG
Seq C2 exon
TTTCTGCTCTCAGAGCAGGACTTGGGAAGGAGCAGAGCTGAGGCCTCTCAAAAACTTCTGGCTGAGCTCAATGGAGCCGTTCAGGTGTCCGTCTACACAGGCGACATCACCAAGGACCTGCTGCTGGATTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012335_CASSETTE1
Average complexity
S
Mappability confidence:
100%=50=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0089916=ThiF=PU(33.3=77.2)
C2:
PF0089916=ThiF=FE(33.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTTTGCACTGGCCACTG
R:
GTGATGTCGCCTGTGTAGACG
Band lengths:
249-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development