BtaINT0155981 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012335 | UBA7
Description
Bos taurus ubiquitin-like modifier activating enzyme 7 (UBA7), mRNA. [Source:RefSeq mRNA;Acc:NM_001012284]
Coordinates
chr22:50991902-50992294:+
Coord C1 exon
chr22:50991902-50992041
Coord A exon
chr22:50992042-50992125
Coord C2 exon
chr22:50992126-50992294
Length
84 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGG
5' ss Score
2.85
3' ss Seq
CTCTTTCTTCCCGCCCACAGGTA
3' ss Score
13.03
Exon sequences
Seq C1 exon
TCCTGTTTGCACTGGCCACTGCTGGGCACTGGCTCCTGCTGGCATTGCCTCCTGTCTACAAGCCCTGCAGCCCCGGGCCTCAGGATGGATACCCTGGAGACCTCCAAGTTGCTGGATAAGGAGCTATACTCACGGCAGCT
Seq A exon
GTGAGGCTCAAGGAGGGGAGGAGAGCAGGGTAGCCTTCTAACCCCGGATTTCCAATTGCCTGCCCTCTTTCTTCCCGCCCACAG
Seq C2 exon
GTATGTGCTGGGCTTGCCCGCCATGCAGAGAATTCAGGGAGCCAAGGTGCTGCTGTCTGGCCTGCAGGGCCTGGGGGCTGAGGTGGCCAAAAACTTGGTCCTGATGGGCGTGGGCAGCCTCACTCTCCATGATCCCCACCCTACTTGCTGGTCTGACCTGGCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012335:ENSBTAT00000016365:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0089916=ThiF=PU(33.3=77.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCAGGATGGATACCCTGG
R:
CGCCCATCAGGACCAAGTTTT
Band lengths:
174-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]