HsaINT0176101 @ hg19
Intron Retention
Gene
ENSG00000182179 | UBA7
Description
ubiquitin-like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:12471]
Coordinates
chr3:49850912-49851391:-
Coord C1 exon
chr3:49851165-49851391
Coord A exon
chr3:49851081-49851164
Coord C2 exon
chr3:49850912-49851080
Length
84 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGG
5' ss Score
2.85
3' ss Seq
CTTCTGCTTCCCATCCACAGGTA
3' ss Score
12.09
Exon sequences
Seq C1 exon
CTTTTCTTTTCTCCAGGAAGAGAGCTGTGACCAGCAGCGTCCCTTATTCGCTTGGCCTTGGTTCCTGTTTGCACTGGCTACAGCAGGGCACTGGCCCCTACTGTCACCGCCACCTACACAAAGACCCTATCTCTGAGCGCTGCAGCCTACTGTTCAGCCCCAGGTTTGAGGATGGATGCCCTGGACGCTTCGAAGCTACTGGATGAGGAGCTGTATTCAAGACAGCT
Seq A exon
GTGAGGCCCGAGGTGGGGGGTGGAGAGTGGGATGGTCTTCAGACCTTGATCTACAACTGCTTGCCTTCTGCTTCCCATCCACAG
Seq C2 exon
GTATGTGCTGGGCTCACCTGCCATGCAGAGGATTCAGGGAGCCAGGGTCCTGGTGTCAGGCCTGCAGGGCCTGGGGGCCGAGGTGGCCAAGAACTTGGTTCTGATGGGTGTGGGCAGCCTCACTCTGCATGATCCCCACCCCACCTGCTGGTCCGACCTGGCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182179-UBA7:NM_003335:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0089916=ThiF=PU(33.3=77.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGAGGATGGATGCCCTGG
R:
CCCACACCCATCAGAACCAAG
Band lengths:
178-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)