RnoINT0159022 @ rn6
Intron Retention
Gene
ENSRNOG00000029195 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:RGD Symbol;Acc:1308323]
Coordinates
chr8:116754178-116754628:+
Coord C1 exon
chr8:116754178-116754375
Coord A exon
chr8:116754376-116754459
Coord C2 exon
chr8:116754460-116754628
Length
84 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
CTCCTTCTTCTTAACCACAGGTA
3' ss Score
9.73
Exon sequences
Seq C1 exon
ATTCATTGGAAGGACCAGGAACCAACTCTGTCTAGTTTCACTTTTGGTTTCCTGAAATTACAGAGGAGCCAGAAAGAGAGCTGTAACCAGCAGCACCCAGCAGCTCCAAGCCCTGTTTCCCTTGCTCTTCTGTGGGCACTGCAGCTTCTTCTCCAGCCCACGACTGAGAATGGATGAAGAGCTGTACTCGAGGCAGCT
Seq A exon
GTGAGTCTCAAGGTGGGATAACAAAGTCAGGTGGCCTCCAGACCTCTGGTCCCCAGCTGTCACCCTCCTTCTTCTTAACCACAG
Seq C2 exon
GTATGTACTGGGCTTGCCTGCTATGCAGAGGATCCGGGAAGCCAAAGTCTTGCTGTGTGGCCTGCAGGGCCTGGGAGCTGAGGTGGCCAAGAACCTGGTCCTTATGGGTGTGGGCAGCCTCACCCTGCATGATCCCCATCCCACCTGCTGGGCTGACTTGGCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029195:ENSRNOT00000068295:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0089916=ThiF=PU(33.3=77.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCTCTTCTGTGGGCACTG
R:
TAAGGACCAGGTTCTTGGCCA
Band lengths:
182-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]