MmuINT0168871 @ mm9
Intron Retention
Gene
ENSMUSG00000032596 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:MGI Symbol;Acc:MGI:1349462]
Coordinates
chr9:107877898-107878296:+
Coord C1 exon
chr9:107877898-107878044
Coord A exon
chr9:107878045-107878127
Coord C2 exon
chr9:107878128-107878296
Length
83 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
CTCCTTCTTCTTAACCACAGGTA
3' ss Score
9.73
Exon sequences
Seq C1 exon
GAGGAAGCAGAAAGAGAGCTGTAACCAGCAGCAACCAGCGCTTTGGGGCCTGTTTGCCTTGTTTTCCTTGCCCCCTCCTGTGAGCCCTACAGCCTCCTCTCCAGCCCCACGACTGAGGATGGATGAAGAGTTATACTCCAGGCAGCT
Seq A exon
GTAAGTCTCAAGGTGGGATAACCAAGTCGGGTGGCTTCCAGACCTTTGGTCCCCAGCTGCCACCTCCTTCTTCTTAACCACAG
Seq C2 exon
GTATGTACTGGGCCTGCCTGCTATGCAGAGGATCCAGGAAGCCAAAGTCTTGCTATGTGGCCTGCAGGGTCTGGGAGCTGAGGTGGCCAAGAACCTAGTCCTTACAGGTGTGGGCAGCCTCACCCTGCATGATCCCCATCCCACCTGCTGGGCTGACTTGGCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032596-Uba7:NM_023738:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0089916=ThiF=PU(33.3=77.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACGACTGAGGATGGATGA
R:
GATGGGGATCATGCAGGGTGA
Band lengths:
182-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: