MmuEX6068776 @ mm9
Exon Skipping
Gene
ENSMUSG00000032596 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:MGI Symbol;Acc:MGI:1349462]
Coordinates
chr9:107877895-107878520:+
Coord C1 exon
chr9:107877895-107878044
Coord A exon
chr9:107878128-107878296
Coord C2 exon
chr9:107878386-107878520
Length
169 bp
Sequences
Splice sites
3' ss Seq
CTCCTTCTTCTTAACCACAGGTA
3' ss Score
9.73
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ATAGAGGAAGCAGAAAGAGAGCTGTAACCAGCAGCAACCAGCGCTTTGGGGCCTGTTTGCCTTGTTTTCCTTGCCCCCTCCTGTGAGCCCTACAGCCTCCTCTCCAGCCCCACGACTGAGGATGGATGAAGAGTTATACTCCAGGCAGCT
Seq A exon
GTATGTACTGGGCCTGCCTGCTATGCAGAGGATCCAGGAAGCCAAAGTCTTGCTATGTGGCCTGCAGGGTCTGGGAGCTGAGGTGGCCAAGAACCTAGTCCTTACAGGTGTGGGCAGCCTCACCCTGCATGATCCCCATCCCACCTGCTGGGCTGACTTGGCTGCTCAG
Seq C2 exon
TGTTTCCTTTCAGAAGAGAGCTTGGGAAGGAACAGGGCTGAGGCCTCTCAGGCGCAATTGGCTCAGCTCAATGAAGCTGTCCAGATCTCCGTCCACAGTGGCGACATCACTGAGGACCTACTGCAGGGTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032596-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0089916=ThiF=PU(33.3=77.2)
C2:
PF0089916=ThiF=FE(33.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTAACCAGCAGCAACCAGC
R:
CCTGCAGTAGGTCCTCAGTGA
Band lengths:
256-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: