GgaEX1062984 @ galGal4
Exon Skipping
Gene
ENSGALG00000001915 | VAV3
Description
guanine nucleotide exchange factor VAV3 [Source:RefSeq peptide;Acc:NP_996745]
Coordinates
chr8:1067216-1070191:-
Coord C1 exon
chr8:1070092-1070191
Coord A exon
chr8:1069000-1069095
Coord C2 exon
chr8:1067216-1067284
Length
96 bp
Sequences
Splice sites
3' ss Seq
ATTCTTCTGTTTCAAACTAGGAA
3' ss Score
9.63
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
ATTGGTTATTTATGGACAGTACTGCAGCCAAGTGGAAACAGCCATATCGTGCTTAGACAACATTTCTAAGACAAAAGAAGATGTTAAGTTGAAATTAGAG
Seq A exon
GAATGTTCCAAGAGGGCCAATAATGGGAAATTTACTTTGCGGGATCTTTTAGTGGTTCCAATGCAAAGAGTGCTAAAATACCACCTACTGCTCCAG
Seq C2 exon
GAGCTGGTAAAGCACACTACAGATCCCATGGAGAAAGCAAATCTAAAACTGGCACTTGATGCAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001915-'21-19,'21-18,25-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(18.9=100)
A:
PF0062115=RhoGEF=FE(17.7=100)
C2:
PF0062115=RhoGEF=FE(12.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTATTTATGGACAGTACTGCAGC
R:
CATCAAGTGCCAGTTTTAGATTTGCT
Band lengths:
159-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]