RnoEX0097882 @ rn6
Exon Skipping
Gene
ENSRNOG00000020485 | Vav3
Description
vav guanine nucleotide exchange factor 3 [Source:RGD Symbol;Acc:1565941]
Coordinates
chr2:212412643-212421025:+
Coord C1 exon
chr2:212412643-212412742
Coord A exon
chr2:212417108-212417203
Coord C2 exon
chr2:212420957-212421025
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTCAAAATCCATTGCCTTAGGAA
3' ss Score
6.07
5' ss Seq
CAGGTCGGT
5' ss Score
7.53
Exon sequences
Seq C1 exon
ATTGGTTATTTATGGACAGTACTGCAGTGGAGTGGAGTCAGCCATCTCTAGCCTAGACTACATCTCTAAGACAAAAGAAGATGTCAGACTGAAACTAGAG
Seq A exon
GAATGTTCAAAGAGAGCCAATAATGGGAAATTTACTCTGCGTGATTTGCTGGTAGTTCCCATGCAGCGGGTGCTGAAATATCACCTCCTCCTTCAG
Seq C2 exon
GAGCTGGTTAAACACACCCATGATCCCATGGAGAAGTCGAACCTGAAGCTGGCTCTGGATGCAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020485-'13-13,'13-11,15-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(18.9=100)
A:
PF0062115=RhoGEF=FE(17.7=100)
C2:
PF0062115=RhoGEF=FE(12.6=100)
Main Skipping Isoform:
ENSRNOT00000077883fB16300
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGTTATTTATGGACAGTACTGCA
R:
TTCATTGCATCCAGAGCCAGC
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]