MmuEX6073515 @ mm10
Exon Skipping
Gene
ENSMUSG00000033721 | Vav3
Description
vav 3 oncogene [Source:MGI Symbol;Acc:MGI:1888518]
Coordinates
chr3:109510886-109519501:+
Coord C1 exon
chr3:109510886-109510985
Coord A exon
chr3:109515988-109516083
Coord C2 exon
chr3:109519433-109519501
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTAAAACTCCATTGCCTTAGGAA
3' ss Score
6.09
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
ATTGGTTATTTATGGGCAGTACTGCAGTGGAGTGGAGTCAGCCATCTCTAACCTAGACTACATCTCTAAGACAAAAGAAGATGTCAAACTGAAATTAGAG
Seq A exon
GAATGTTCAAAAAGAGCCAATAACGGGAAGTTTACTCTGCGCGATTTGCTGGTCGTTCCAATGCAGCGCGTGCTGAAGTATCACCTCCTCCTTCAG
Seq C2 exon
GAGCTGGTAAAACACACCCATGACCCTATGGAGAAGGCGAACCTGAAGCTGGCTCTGGATGCAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033721-'14-22,'14-19,19-22=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(18.9=100)
A:
PF0062115=RhoGEF=FE(17.7=100)
C2:
PF0062115=RhoGEF=FE(12.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGGTTATTTATGGGCAGTACTG
R:
TTCATTGCATCCAGAGCCAGC
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types