GgaEX1063331 @ galGal4
Exon Skipping
Gene
ENSGALG00000026044 | VPS37D
Description
vacuolar protein sorting 37 homolog D (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:18287]
Coordinates
chr19:75141-75910:+
Coord C1 exon
chr19:75141-75312
Coord A exon
chr19:75440-75522
Coord C2 exon
chr19:75656-75910
Length
83 bp
Sequences
Splice sites
3' ss Seq
GCCGCGCTGTCCCCGCACAGAGG
3' ss Score
6.62
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
TTCCAGGCGCTGCAGCGGGAGCGGGAGGAGCGGCTGGCGGCCAACAGCGCGCTGGCCCGGGACAACCTGGCGCTGCGGCCGCGGCTGGAGGACGGGAAGGCGGCCCTGGCCATCAAATACCAGGAGCTGCGCGAGGTGCGCGAGGCGTGCCGGGCCAAACTGCGGCGCCTGG
Seq A exon
AGGCATACCTGGAAGAGTGCGGCCCGCAGCGCGCCCTGGGCCGGCTCCGAGCCGCGCTGGACGCGTCCGAAGCGGAGGCGGAG
Seq C2 exon
ACGCAGATGCAGCGGTTCCTGGCGCACGAGGTGCCCCTCGATGCCTTCCTGGAGTCCTTCTGCCGCAGCCGCGCGCGCTCCCACGTCTCTCGGACGCAGCTGGAGAAGCTGCAGGAGCTGCTGCAGAGGGGCCGGGACCCTGAGGGGGAGCCCCAGGGGCTCAACCCGGCGTCGGGCCGCGGCGCGGCCTCTCCCAAAGCCCCGCAGCTGCGCTGCGGCTTCGTGCCCGCCGTCCTCGTCCCCGCGGCGGCCGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026044_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.179 C2=0.544
Domain overlap (PFAM):
C1:
PF072008=Mod_r=FE(38.0=100)
A:
PF072008=Mod_r=FE(18.0=100)
C2:
PF072008=Mod_r=PD(24.0=52.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAAATACCAGGAGCTGCGC
R:
GCTCCTGCAGCTTCTCCAG
Band lengths:
179-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]