BtaEX0039723 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008487 | VPS37D
Description
Bos taurus vacuolar protein sorting 37 homolog D (S. cerevisiae) (VPS37D), mRNA. [Source:RefSeq mRNA;Acc:NM_001205718]
Coordinates
chr25:34092808-34094505:-
Coord C1 exon
chr25:34094334-34094505
Coord A exon
chr25:34093774-34093856
Coord C2 exon
chr25:34092808-34093166
Length
83 bp
Sequences
Splice sites
3' ss Seq
CGTCCCTCTGCGGCCCTCAGAGG
3' ss Score
6.97
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
TTCCAAGGCCTGCAGCTGGAGCGCGAGGCGTGCCTGGCTTCCAACTACGCGCTAGCCAAGGAGAATCTGGCGTTGCGTCCCCGCCTGGAGATGGGCCGCACTGCCCTGGCCATCAAGTACCAGGAGCTCCGGGAGGTGGCTGAGAGCTGTGCAGACAAGCTGCAGCGACTGG
Seq A exon
AGGAGAGCATGCACCGCTGGAGCCCCCACTGCGCGCTGGGCTGGCTGCAGGCTGAGCTGGAAGAAGCTGAGCAGGAGGCTGAG
Seq C2 exon
GAGCAGATGGAGCAGCTGCTGCTGGGAGAGCAGAGCCTGGAGGCTTTCCTGCCCGCCTTCCAACGAGGCCGGGCCCTGGCCCACCTGAGGCGCACCCAGGCGGAGAAGCTGCAGGAGCTGCTGCGGCGCCGGGAGCGGTCTGGCCAGCCAGCCCCTACGGCTGCCGCGGAGCCCCCCAAATCCTTCCCCGCTGCCGCAGTCCTGCCCACCGGGGCCGCCCGGGGGCCGCCGGCAGTGCCCCGGAGCCTGCCCCCCTTGGACTCCCGCCCAGTGCCCCCACTGAAGGGCTCCCCCGGGTGCCCCCTGGGCCCAGCCCCTCTGCTGAGCCCTCGGCCCTCGCAGCCAGAGCCCCCCCACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008487_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.214 C2=0.825
Domain overlap (PFAM):
C1:
PF072008=Mod_r=FE(44.5=100),PF0307011=TENA_THI-4=FE(43.8=100)
A:
PF072008=Mod_r=FE(21.1=100),PF0307011=TENA_THI-4=FE(20.8=100)
C2:
PF072008=Mod_r=PD(28.1=30.0),PF0307011=TENA_THI-4=PD(30.8=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCTAGCCAAGGAGAATCTG
R:
CCTCCAGGCTCTGCTCTCC
Band lengths:
167-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development