MmuEX0051534 @ mm10
Exon Skipping
Gene
ENSMUSG00000043614 | Vps37d
Description
vacuolar protein sorting 37D [Source:MGI Symbol;Acc:MGI:2159402]
Coordinates
chr5:135072900-135078266:-
Coord C1 exon
chr5:135078062-135078266
Coord A exon
chr5:135074394-135074476
Coord C2 exon
chr5:135072900-135073983
Length
83 bp
Sequences
Splice sites
3' ss Seq
TGTCCCCCTGTGGTCCCCAGAGA
3' ss Score
9.3
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GGAGCCGGGGCGGAGCGGGGCCGATCGGGCCGAGCCAGCAGCCGAGCTGGGGGCGCGGGCGGGCGGTATGTACCGGGCCCGGGCGGCGCGGGCGGGGCCGGAGCCCGGCAGCCCGGGGCGCTTTGGGATCCTCAGCACCGGGCAGCTCCGGGATCTGCTTCAAGATGAGCCCAAGCTGGACCGGATCGTGCGGCTCAGCAGGAAG
Seq A exon
AGAAGAGCATGCATCGCTGGAGCCCCCAATGTGCGCTGGGCTGGCTGCAGGCTGAGCTGGAAGAGGCTGAGCAGGAGGCTGAG
Seq C2 exon
GTCCAGATGGAGCAGCTGCTGCTGGGGGAACAGAGCCTGGAGGCCTTCCTGCCAGCCTTCCAGAGGGGCCGTGCCCTGGCCCACCTGAGGCGGACACAGGCCGAGAAACTACAGGAGGTGCTGAGGCGTCGAGAGCGCTCTGCCCAGCCGGCCCCCACAACTGCTGCTGCTGCTGCCGCCGCCGCCACCGCCATGGATCCCCCCAAACCCTTCCCTGCTGCTGCCGTCCTGCCCACTGGGGCCGCCCGGGGACCACCTCCAGCAGTACCCCGGAGCCTGCCCCCCTTGGACTCCCGCCCAGTGCCCCCAGTGAAGGGCTCTCCCGGGTGCCCTTTTGGCCCAGCCCCTTTGCTGAGCCCTCGACCCTCTCAGCCTGAACCCCCTCATCGGTAGGAGCCAGGGTGAGGCCTCCCAGCGGGGGTCCAGACAAACTTGATTCATGGCTCCTCCTCCTCCCCCACTGCCTGGGTGGGGGGAGGGGCAGGCCCCTCCCCCTAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043614_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.375 A=0.018 C2=0.812
Domain overlap (PFAM):
C1:
PF072008=Mod_r=PU(21.6=58.7),PF0307011=TENA_THI-4=PU(15.3=41.3)
A:
PF072008=Mod_r=FE(21.6=100),PF0307011=TENA_THI-4=FE(21.8=100)
C2:
PF072008=Mod_r=PD(24.0=27.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTCAAGATGAGCCCAAGC
R:
CCTCCTGTAGTTTCTCGGCCT
Band lengths:
168-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types