MmuEX0051533 @ mm10
Exon Skipping
Gene
ENSMUSG00000043614 | Vps37d
Description
vacuolar protein sorting 37D [Source:MGI Symbol;Acc:MGI:2159402]
Coordinates
chr5:135072900-135078266:-
Coord C1 exon
chr5:135078062-135078266
Coord A exon
chr5:135076458-135076629
Coord C2 exon
chr5:135072900-135073983
Length
172 bp
Sequences
Splice sites
3' ss Seq
TTAGCTCTCGTCCACCGCAGTTC
3' ss Score
7
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
GGAGCCGGGGCGGAGCGGGGCCGATCGGGCCGAGCCAGCAGCCGAGCTGGGGGCGCGGGCGGGCGGTATGTACCGGGCCCGGGCGGCGCGGGCGGGGCCGGAGCCCGGCAGCCCGGGGCGCTTTGGGATCCTCAGCACCGGGCAGCTCCGGGATCTGCTTCAAGATGAGCCCAAGCTGGACCGGATCGTGCGGCTCAGCAGGAAG
Seq A exon
TTCCAGGGTCTGCAGCTGGAACGGGATGCCTGCTTGGCCTCTAACTACGCGCTGGCCAAGGAGAACCTGGCCTTGCGGCCCCGCCTGGAGATGGGTCGGACAGCCCTGGCCATCAAGTACCAAGAGCTTCGAGAGGTGGCTGAGAACTGCGCAGACAAACTGCAGAGACTGG
Seq C2 exon
GTCCAGATGGAGCAGCTGCTGCTGGGGGAACAGAGCCTGGAGGCCTTCCTGCCAGCCTTCCAGAGGGGCCGTGCCCTGGCCCACCTGAGGCGGACACAGGCCGAGAAACTACAGGAGGTGCTGAGGCGTCGAGAGCGCTCTGCCCAGCCGGCCCCCACAACTGCTGCTGCTGCTGCCGCCGCCGCCACCGCCATGGATCCCCCCAAACCCTTCCCTGCTGCTGCCGTCCTGCCCACTGGGGCCGCCCGGGGACCACCTCCAGCAGTACCCCGGAGCCTGCCCCCCTTGGACTCCCGCCCAGTGCCCCCAGTGAAGGGCTCTCCCGGGTGCCCTTTTGGCCCAGCCCCTTTGCTGAGCCCTCGACCCTCTCAGCCTGAACCCCCTCATCGGTAGGAGCCAGGGTGAGGCCTCCCAGCGGGGGTCCAGACAAACTTGATTCATGGCTCCTCCTCCTCCCCCACTGCCTGGGTGGGGGGAGGGGCAGGCCCCTCCCCCTAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043614_MULTIEX1-2/3=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.375 A=0.006 C2=0.812
Domain overlap (PFAM):
C1:
PF072008=Mod_r=PU(21.6=58.7),PF0307011=TENA_THI-4=PU(15.3=41.3)
A:
PF072008=Mod_r=FE(45.6=100),PF0307011=TENA_THI-4=FE(46.0=100)
C2:
PF072008=Mod_r=PD(24.0=27.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCTGGACCGGATCGTG
R:
CAGCAGCAGGGAAGGGTTTG
Band lengths:
257-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types