GgaEX1063330 @ galGal4
Exon Skipping
Gene
ENSGALG00000026044 | VPS37D
Description
vacuolar protein sorting 37 homolog D (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:18287]
Coordinates
chr19:74966-75522:+
Coord C1 exon
chr19:74966-75067
Coord A exon
chr19:75141-75312
Coord C2 exon
chr19:75440-75522
Length
172 bp
Sequences
Splice sites
3' ss Seq
CTCACCGCCCGGCGCCGCAGTTC
3' ss Score
4.39
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
CCCGGGGCCCCGCGCTGCTTCGGGGCGCTGAGCACGGGGCAGCTGCGGGCGCTGCTGCAGGACGAGCCCCGGCTGCAGCGCGCCGTCCGCCTCAGCAAGAAG
Seq A exon
TTCCAGGCGCTGCAGCGGGAGCGGGAGGAGCGGCTGGCGGCCAACAGCGCGCTGGCCCGGGACAACCTGGCGCTGCGGCCGCGGCTGGAGGACGGGAAGGCGGCCCTGGCCATCAAATACCAGGAGCTGCGCGAGGTGCGCGAGGCGTGCCGGGCCAAACTGCGGCGCCTGG
Seq C2 exon
AGGCATACCTGGAAGAGTGCGGCCCGCAGCGCGCCCTGGGCCGGCTCCGAGCCGCGCTGGACGCGTCCGAAGCGGAGGCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026044-'1-4,'1-1,3-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=0.000 C2=0.179
Domain overlap (PFAM):
C1:
PF072008=Mod_r=PU(18.0=79.4)
A:
PF072008=Mod_r=FE(38.0=100)
C2:
PF072008=Mod_r=FE(18.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]