HsaEX6008419 @ hg19
Exon Skipping
Gene
ENSG00000176428 | VPS37D
Description
vacuolar protein sorting 37 homolog D (S. cerevisiae) [Source:HGNC Symbol;Acc:18287]
Coordinates
chr7:73082155-73084432:+
Coord C1 exon
chr7:73082155-73082426
Coord A exon
chr7:73083749-73083920
Coord C2 exon
chr7:73084350-73084432
Length
172 bp
Sequences
Splice sites
3' ss Seq
TAGCTCCTCTCTGCCCGCAGTTC
3' ss Score
9.07
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
GGCGGCGGAGCGGTGCGTGCGGCCGGAGCCGGAGCGGATCCTGGAGCCGGAGCGGAGCGGAGCGGAGCGGAGCCGGGGCGGAGCGGGCCGAGCGGGCCGAGCCAGCAGCCGAGCTGGGGGCGCGGGCGGGCGGCATGTACCGGGCCCGGGCGGCGCGGGCGGGGCCGGAGCCCGGCAGCCCGGGGCGCTTTGGGATCCTCAGCACCGGGCAGCTCCGGGACCTGCTTCAGGATGAGCCCAAGCTGGACCGGATCGTGCGGCTCAGCAGGAAG
Seq A exon
TTCCAGGGCCTGCAGCTGGAGCGTGAGGCCTGCCTGGCCTCCAACTACGCGCTGGCCAAGGAGAACCTGGCCCTGCGGCCCCGCCTGGAGATGGGCCGGGCTGCCCTGGCCATCAAATACCAGGAGCTTCGTGAGGTGGCCGAGAACTGCGCGGACAAGCTGCAGCGACTGG
Seq C2 exon
AGGAAAGCATGCATCGCTGGAGTCCCCACTGCGCGCTGGGCTGGCTGCAGGCTGAGCTAGAAGAGGCGGAGCAGGAGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176428-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.370 A=0.017 C2=0.143
Domain overlap (PFAM):
C1:
PF072008=Mod_r=PU(18.0=58.7),PF0307011=TENA_THI-4=PU(13.6=43.5)
A:
PF072008=Mod_r=FE(38.0=100),PF0307011=TENA_THI-4=FE(38.8=100)
C2:
PF072008=Mod_r=FE(18.0=100),PF0307011=TENA_THI-4=FE(18.4=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCCTGGAGCCGGAGC
R:
TCCAGCGATGCATGCTTTCC
Band lengths:
258-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)