BtaEX6110249 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008487 | VPS37D
Description
Bos taurus vacuolar protein sorting 37 homolog D (S. cerevisiae) (VPS37D), mRNA. [Source:RefSeq mRNA;Acc:NM_001205718]
Coordinates
chr25:34093774-34096054:-
Coord C1 exon
chr25:34095827-34096054
Coord A exon
chr25:34094334-34094505
Coord C2 exon
chr25:34093774-34093856
Length
172 bp
Sequences
Splice sites
3' ss Seq
GGGCTCTTCCCCGCCGGCAGTTC
3' ss Score
5.29
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
CGGAGCCGGAGCCGGAGCGGAGCGGAGCCGGGGCGGAGCGGGCCGAGCGGGCCGAGCCAGCAGCCGAGCTGGGGGCGCGGGCGGGCGGCATGTACCGGGCCCGGGCGGCGCGGGCGGGGCCGGAGCCCGGCAGCCCGGGGCGCTTTGGGATCCTCAGCACCGGGCAGCTTCCGGGTCCTGCTTCAGGATGAGCCCAAGCTGGACCGGATAATGCGGCTCAGCAGGAAG
Seq A exon
TTCCAAGGCCTGCAGCTGGAGCGCGAGGCGTGCCTGGCTTCCAACTACGCGCTAGCCAAGGAGAATCTGGCGTTGCGTCCCCGCCTGGAGATGGGCCGCACTGCCCTGGCCATCAAGTACCAGGAGCTCCGGGAGGTGGCTGAGAGCTGTGCAGACAAGCTGCAGCGACTGG
Seq C2 exon
AGGAGAGCATGCACCGCTGGAGCCCCCACTGCGCGCTGGGCTGGCTGCAGGCTGAGCTGGAAGAAGCTGAGCAGGAGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008487-'0-1,'0-0,3-1=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.214
Domain overlap (PFAM):
C1:
PF072008=Mod_r=PU(3.9=83.3),PF0307011=TENA_THI-4=PU(2.3=50.0)
A:
PF072008=Mod_r=FE(44.5=100),PF0307011=TENA_THI-4=FE(43.8=100)
C2:
PF072008=Mod_r=FE(21.1=100),PF0307011=TENA_THI-4=FE(20.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCGCTTTGGGATCCTCA
R:
GCCTCCTGCTCAGCTTCTTC
Band lengths:
170-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]