DreEX0009381 @ danRer10
Exon Skipping
Gene
ENSDARG00000097055 | VPS37D
Description
vacuolar protein sorting 37 homolog D (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:18287]
Coordinates
chr5:58446359-58516997:+
Coord C1 exon
chr5:58446359-58446733
Coord A exon
chr5:58477910-58478081
Coord C2 exon
chr5:58516915-58516997
Length
172 bp
Sequences
Splice sites
3' ss Seq
TAAATAACATTTGTGTTTAGTTC
3' ss Score
4.85
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GGCACGTTGTAAATGCTGCGGCGTGGCGCCTCCTGGCGGTGGAATGCGGAACCGGAGGAATCCGTAACCGTACAGCAGAGCAGAGTCTCTCCGTGCATTGTCTTCACAAACAGTCCGCGGTGCGCCTTCACGCCGAGCAGAGCTCCCCCAGCGCCGCTCCCCTGCTCACCTCCAGCCGGCGCGCAGCGACAGCAAAATGGAAGTTAAATGGCTGACAAACGGAGTTGTTTAGTGCGCCTCACGGGGACAAGAATGTCCCAGAAAAGCGACGCGAACTCTTACCCAGATGGGTACAGGGTCCTCAATAGCTGCGAACTACGGGAGCTCCTACAAGATGAAGACAAAATGAATCAGATCGTGCGACTCAGTGAAAAG
Seq A exon
TTCCAGGAGCTCCAGATGGACAGGGATACCTTGTTAGTAACCAATCGGAGTCTTGCAGAAGATAGCCTTACCCGTCGGCCTCACCTTCAAAATGGCAAGCTGCAGTTGGCTGCAAAGTATGAAGAACTGGCAACGCTGAGCACCGCCTGCAGGGAAAAGCAAAGCCGACTTG
Seq C2 exon
AGGCCTTCACGGAGAAGCACAGCCCCCAGACTGCCCACAATCTGCTGCAGGAGGAGGTCACGCGTGCCGAAGAACAGTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000097055-'2-4,'2-1,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.293 C2=0.929
Domain overlap (PFAM):
C1:
PF118023=CENP-K=PU(21.5=62.5),PF072008=Mod_r=PU(17.4=46.4)
A:
PF118023=CENP-K=FE(35.0=100),PF072008=Mod_r=FE(38.3=100)
C2:
PF118023=CENP-K=FE(16.6=100),PF072008=Mod_r=FE(18.1=100)
Main Skipping Isoform:
ENSDART00000154978fB833
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGACAGCAAAATGGAAGTTA
R:
CTCCTCCTGCAGCAGATTGTG
Band lengths:
246-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]