HsaEX6008419 @ hg38
Exon Skipping
Gene
ENSG00000176428 | VPS37D
Description
VPS37D, ESCRT-I subunit [Source:HGNC Symbol;Acc:HGNC:18287]
Coordinates
chr7:73667825-73670102:+
Coord C1 exon
chr7:73667825-73668096
Coord A exon
chr7:73669419-73669590
Coord C2 exon
chr7:73670020-73670102
Length
172 bp
Sequences
Splice sites
3' ss Seq
TAGCTCCTCTCTGCCCGCAGTTC
3' ss Score
9.07
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
GGCGGCGGAGCGGTGCGTGCGGCCGGAGCCGGAGCGGATCCTGGAGCCGGAGCGGAGCGGAGCGGAGCGGAGCCGGGGCGGAGCGGGCCGAGCGGGCCGAGCCAGCAGCCGAGCTGGGGGCGCGGGCGGGCGGCATGTACCGGGCCCGGGCGGCGCGGGCGGGGCCGGAGCCCGGCAGCCCGGGGCGCTTTGGGATCCTCAGCACCGGGCAGCTCCGGGACCTGCTTCAGGATGAGCCCAAGCTGGACCGGATCGTGCGGCTCAGCAGGAAG
Seq A exon
TTCCAGGGCCTGCAGCTGGAGCGTGAGGCCTGCCTGGCCTCCAACTACGCGCTGGCCAAGGAGAACCTGGCCCTGCGGCCCCGCCTGGAGATGGGCCGGGCTGCCCTGGCCATCAAATACCAGGAGCTTCGTGAGGTGGCCGAGAACTGCGCGGACAAGCTGCAGCGACTGG
Seq C2 exon
AGGAAAGCATGCATCGCTGGAGTCCCCACTGCGCGCTGGGCTGGCTGCAGGCTGAGCTAGAAGAGGCGGAGCAGGAGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176428-'0-2,'0-0,6-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.370 A=0.017 C2=0.143
Domain overlap (PFAM):
C1:
PF072008=Mod_r=PU(18.0=58.7),PF0307011=TENA_THI-4=PU(13.6=43.5)
A:
PF072008=Mod_r=FE(38.0=100),PF0307011=TENA_THI-4=FE(38.8=100)
C2:
PF072008=Mod_r=FE(18.0=100),PF0307011=TENA_THI-4=FE(18.4=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCCTGGAGCCGGAGC
R:
TCCAGCGATGCATGCTTTCC
Band lengths:
258-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains