RnoEX0098342 @ rn6
Exon Skipping
Gene
ENSRNOG00000048699 | Vps37d
Description
VPS37D, ESCRT-I subunit [Source:RGD Symbol;Acc:1587769]
Coordinates
chr12:24651342-24656793:+
Coord C1 exon
chr12:24651342-24651518
Coord A exon
chr12:24652952-24653123
Coord C2 exon
chr12:24655690-24656793
Length
172 bp
Sequences
Splice sites
3' ss Seq
TAGCTCTCCTTCACCGGCAGTTC
3' ss Score
5.75
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
GCCGAGCCAGCAGCCGAGCTGGGGGCGCGGGCGGGCGGTATGTACCGGGCCCGGGCGGCGCGGGCGGGGCCGGAGCCCGGCAGCCCGGGGCGCTTTGGGATCCTCAGCACCGGGCAGCTCCGGGATCTGCTTCAAGATGAGCCCAAGCTGGACCGGATCGTGCGGCTCAGCAGGAAG
Seq A exon
TTCCAGGGTCTGCAGCTGGAGCGGGATGCGTGCTTGGCCTCTAACTACGCGCTGGCCAAGGAGAACCTGGCCTTGCGTCCTCGCCTGGAGATGGGCCGGACAGCCCTGGCCATCAAGTACCAAGAGCTTCGAGAGGTGGCCGAGAACTGCGCAGACAAGCTGCAGAGACTGG
Seq C2 exon
GTCCAGATGGAGCAGCTGCTGCTGGGGGAACAGAGTCTGGAGGCCTTCCTGCCAGCCTTCCAGAGGGGCCGTGCCCTGGCCCACCTGAGGCGGACACAGGCAGAGAAACTACAGGAAGTGCTGAGGCGTCGAGAGCGCTCTGCCCAGCCGGCCCCCACCACTGCTGCTGCAGCTGCTGCTGCCGCCACCGCCATGGATCCCCCCAAACCCTTCCCTGCTGCTGCCGTCCTGCCCACTGGGGCCGCCCGGGGACCACCTCCAGCAGTACCCCGGAGCCTGCCCCCCTTGGACTCCCGCCCAGTGCCCCCAGTGAAGGGCTCCCCCGGGTGCCCTTTTGGCCCAGCCCCTTTGCTGAGCCCTCGACCCTCTCAACCTGAACCCCCTCATCGGTAGGAGCCAGGGTGCGCCCTCCCAGCGGGGGTCCAGACAAACTTGATTCATGGCTCCTCCTCCTCCCCCACTGCCTGGGTGGGGGGAGGGGCAGGCCCCTCCCCCTAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048699_MULTIEX1-1/2=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.359 A=0.017 C2=0.812
Domain overlap (PFAM):
C1:
PF072008=Mod_r=PU(18.0=58.7)
A:
PF072008=Mod_r=FE(38.0=100)
C2:
PF072008=Mod_r=PD(12.1=3.1),PF072008=Mod_r=PD(94.7=27.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCTGGACCGGATCGTG
R:
CAGCAGCAGGGAAGGGTTTG
Band lengths:
257-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]