DreEX0009382 @ danRer10
Exon Skipping
Gene
ENSDARG00000097055 | VPS37D
Description
vacuolar protein sorting 37 homolog D (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:18287]
Coordinates
chr5:58477910-58532555:+
Coord C1 exon
chr5:58477910-58478081
Coord A exon
chr5:58516915-58516997
Coord C2 exon
chr5:58528851-58532555
Length
83 bp
Sequences
Splice sites
3' ss Seq
AAGTGTTTGTGTTCTTCCAGAGG
3' ss Score
7.19
5' ss Seq
GAGGTGATT
5' ss Score
5.41
Exon sequences
Seq C1 exon
TTCCAGGAGCTCCAGATGGACAGGGATACCTTGTTAGTAACCAATCGGAGTCTTGCAGAAGATAGCCTTACCCGTCGGCCTCACCTTCAAAATGGCAAGCTGCAGTTGGCTGCAAAGTATGAAGAACTGGCAACGCTGAGCACCGCCTGCAGGGAAAAGCAAAGCCGACTTG
Seq A exon
AGGCCTTCACGGAGAAGCACAGCCCCCAGACTGCCCACAATCTGCTGCAGGAGGAGGTCACGCGTGCCGAAGAACAGTCTGAG
Seq C2 exon
GAGCTGCTGGAGAGATTCATGGAGGGCCACGTGCCCCTGGAGGAGTTCCTGGATTGTTTTCAAAGCCACAGGAAGACATACCACATCCGCCGCGCTCAAGCCGAGAAGCTCCAGGAGCTCAACAGACCCGGCAGGAAAGCCAAGAAACAAGAGGAGGAGCAGCACAAGAGGGAGGACCAGCTCAAGGAGTCCCATTCTAACGGCATCAGCGGCCCGCCTCGGGTCTTCCAACTTCGCTACGGCCTGACCCCGGCCATCCTGCTGCCTCTGTCATCTTCCTCCGCCTCAATACTGGACTCTCGCTCGGGCCAGCCACAGGGGTCAGGCCCCAGCGCCCCACACTCCTGCCCAGGGCAGCCTGTCGGCCTCAGAGTAATAGGACAGTTACCTGGCTGGCCTGTCAGGCCGGTGCGCCTGCAGCAACTGTACAGGCCCAGTCCCCATCAGCCTGAACCACCGTGTCGATAACGCTCAGCGCGAAAAACCCAAGACCGCACGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000097055_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.293 A=0.929 C2=0.665
Domain overlap (PFAM):
C1:
PF118023=CENP-K=FE(35.0=100),PF072008=Mod_r=FE(38.3=100)
A:
PF118023=CENP-K=FE(16.6=100),PF072008=Mod_r=FE(18.1=100)
C2:
PF118023=CENP-K=PD(25.2=26.3),PF072008=Mod_r=PD(24.2=23.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTCAAAATGGCAAGCTGC
R:
CGGCGGATGTGGTATGTCTTC
Band lengths:
182-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]