GgaEX6000012 @ galGal3
Exon Skipping
Gene
ENSGALG00000023986 | F1P0H2_CHICK
Description
NA
Coordinates
chr1:105868-107028:-
Coord C1 exon
chr1:106910-107028
Coord A exon
chr1:106636-106833
Coord C2 exon
chr1:105868-106133
Length
198 bp
Sequences
Splice sites
3' ss Seq
TGACGTGTTTCTGCTTGCAGCAC
3' ss Score
9.81
5' ss Seq
AACGTAAGG
5' ss Score
7.34
Exon sequences
Seq C1 exon
GCGACGAAGCCGGGCGCGATGGGCTGCCGTGCGCCTCCGGGAGCGATGGTGCTGCTGCTGCCCCTCGCGGTGCTGCTGGCCGTCTGCCGGCCTGGGCACGGCTCCTCCGGCGCCTGCGA
Seq A exon
CACCTGCGGGCTCCGGCCCATGGCTTATCACTACGGGGGAACGCGTGTCGTGGGCGGCACGGACGCCCCGCAGGGGGCCTGGCCGTGGATTGTCAGCCTCCAAAGCACGTGGTATGTGGGCACGGGACACATCTGTGGAGGATCTCTCATCACCCCGCAGTGGGTCCTCACGGCAGCGCACTGCTTCGACCATGCAAC
Seq C2 exon
CCCCGACACGCCGTGGCACGTGGTGATCGGTGGCCACGATCTGAAACGCCTGGGCCCCGAAGCTGTCGTGCGCAACGTGATACGGATAATCCCCCACGAATACTATCACAGAAACAACATGGCCAATGACATCGCGCTGCTTGAGCTGGACCAACCTGTCCAGTGCAGCTACTACATCCAGCTCGCCTGCGTGCCCGATGCCTCGCTGCGAGTGTCAGAGCTCACAGACTGCTATGTCAGTGGCTGGGGACACATGGGGCTGAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023986-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(20.8=74.6)
C2:
PF0008921=Trypsin=FE(37.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGTGCTGCTGCTGCC
R:
GTAGCTGCACTGGACAGGTTG
Band lengths:
247-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]