RnoEX0006097 @ rn6
Exon Skipping
Gene
ENSRNOG00000029762 | Acr
Description
acrosin [Source:RGD Symbol;Acc:2024]
Coordinates
chr7:130542202-130543897:+
Coord C1 exon
chr7:130542202-130542299
Coord A exon
chr7:130543208-130543414
Coord C2 exon
chr7:130543614-130543897
Length
207 bp
Sequences
Splice sites
3' ss Seq
GTTTCCTGGTCTCTCCTCAGTGG
3' ss Score
8.85
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
AGGCCAGGTTAGGGCAGGAGTATGGTAGAGATGCTGCCAACTGTCGTTGCGCTGGTCCTGGCAGTGTCCGTGGTTGCCAAGGATAACACCACGTGTGA
Seq A exon
TGGCCCCTGTGGGTTACGATTCAGGCAGAACCCACAAGCAGGTATCCGGATTGTCGGAGGGCAGACTTCGTCGCCTGGGGCCTGGCCCTGGATGGTCAGTTTACAGATCTTCACGTCCCATAACAGCCGTAGGTATCACGCCTGCGGAGGCAGCCTACTGAACTCCCACTGGGTGCTCACGGCTGCTCACTGCTTCGATAACAAAAA
Seq C2 exon
AAAAGTCTATGACTGGAGACTGGTTTTTGGAGCCCATGAAATTGAATACGGAAGAAACAAGCCAGTGAAAGAGCCCCAGCAGGAAAGATACGTGCAGAAAATTGTCATCCACGAGAAATACAACGCTGTGACCGAGGGGAACGACATTGCCCTCTTGAAAGTCACTCCTCCTGTTACATGTGGGGACTTCGTTGGGCCTGGCTGCCTACCTCATTTTAAGTCTGGTCCTCCCAGAATCCCCCACACCTGCTACGTGACTGGGTGGGGATACATAAAAGATAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029762-'0-3,'0-1,5-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.042
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(21.3=74.3)
C2:
PF0008921=Trypsin=FE(38.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAAGGATAACACCACGTG
R:
GTATCCCCACCCAGTCACGTA
Band lengths:
295-502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]