MmuEX0003547 @ mm9
Exon Skipping
Gene
ENSMUSG00000022622 | Acr
Description
acrosin prepropeptide [Source:MGI Symbol;Acc:MGI:87884]
Coordinates
chr15:89398757-89399974:+
Coord C1 exon
chr15:89398757-89398869
Coord A exon
chr15:89399768-89399808
Coord C2 exon
chr15:89399894-89399974
Length
41 bp
Sequences
Splice sites
3' ss Seq
GTTTCCTGGTCTCTCCTCAGTGG
3' ss Score
8.85
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
GAGGTCACAGCTTGCAGGCCAGGTTAGGGCAGGAGTATGGTAGAGATGCTGCCAACTGTCGCTGTGCTGGTCTTGGCAGTGTCCGTGGTTGCCAAGGATAACACCACGTGTGA
Seq A exon
TGGTCCCTGTGGGTTACGATTCAGGCAGAACTCACAAGCAG
Seq C2 exon
CCGCAGGTACCACGCCTGTGGAGGCAGCCTCCTGAACTCCCACTGGGTGCTCACAGCTGCCCACTGCTTCGATAACAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022622_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=50%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(21.3=74.3)
C2:
PF0008921=Trypsin=PU(21.3=74.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTAGGGCAGGAGTATGGT
R:
AGTGGGAGTTCAGGAGGCTG
Band lengths:
137-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: