BtaEX6025923 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010182 | ACR
Description
acrosin [Source:HGNC Symbol;Acc:HGNC:126]
Coordinates
chr5:120222129-120223896:+
Coord C1 exon
chr5:120222129-120222211
Coord A exon
chr5:120223190-120223396
Coord C2 exon
chr5:120223613-120223896
Length
207 bp
Sequences
Splice sites
3' ss Seq
TGCCTGTGGTCTCTCCTCAGTGG
3' ss Score
9.16
5' ss Seq
AAAGTATGT
5' ss Score
6.93
Exon sequences
Seq C1 exon
AGGACTTTGGCAGAGATGCTGCCAACTGCCATTCTGCTGGTCTTGGCAGTATCTGTGGTCACCAGAGATAACACCACGTGTGA
Seq A exon
TGGCCCCTGTGGGACACGGTTCCGGCAGAACCGTCAGGGGGGCATGCGGATCATCGGCGGGCAAGACGCTGCCCACGGGTCCTGGCCCTGGATGGTCAGCCTCCAGATCTTCACATACCACAACAACCGGCGGTACCACGTGTGTGGGGGCTCCCTGCTGAACGCCCACTGGCTGCTCACTGCCGCTCACTGCTTCAGGATCAAAAA
Seq C2 exon
AAAAGTGACCGACTGGAGGCTGATCTTTGGAGCTAAGGAAGTTGAGTGGGGGAGCAATAAGCCAGTGAAGCCGCCTCTGCAGGAGAGATATGTTGAGAAAATCATCATTCATGAGAAATACTCGGCGAGCTCAGAGGCCAACGACATTGCTCTCATAAAGATCACCCCTCCTGTTATCTGTGGGCACTTCATTGGACCAGGCTGCCTGCCTCAGTTTAGGGCAGGCCCACCCAGAGTTCCCCAGACATGCTGGGTGGCTGGCTGGGGATTCTTACGTGAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010182-'2-1,'2-0,3-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.043 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(21.3=74.3)
C2:
PF0008921=Trypsin=FE(38.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAGTATCTGTGGTCACCA
R:
CAGCATGTCTGGGGAACTCTG
Band lengths:
292-499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]