GgaEX6000012 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1P0H2]
Coordinates
chr1:112505-113665:-
Coord C1 exon
chr1:113547-113665
Coord A exon
chr1:113273-113470
Coord C2 exon
chr1:112505-112770
Length
198 bp
Sequences
Splice sites
3' ss Seq
TGACGTGTTTCTGCTTGCAGCAC
3' ss Score
9.81
5' ss Seq
AACGTAAGG
5' ss Score
7.34
Exon sequences
Seq C1 exon
GCGACGAAGCCGGGCGCGATGGGCTGCCGTGCGCCTCCGGGAGCGATGGTGCTGCTGCTGCCCCTCGCGGTGCTGCTGGCCGTCTGCCGGCCTGGGCACGGCTCCTCCGGCGCCTGCGA
Seq A exon
CACCTGCGGGCTCCGGCCCATGGCTTATCACTACGGGGGAACGCGTGTCGTGGGCGGCACGGACGCCCCGCAGGGGGCCTGGCCGTGGATTGTCAGCCTCCAAAGCACGTGGTATGTGGGCACGGGACACATCTGTGGAGGATCTCTCATCACCCCGCAGTGGGTCCTCACGGCAGCGCACTGCTTCGACCATGCAAC
Seq C2 exon
CCCCGACACGCCGTGGCACGTGGTGATCGGTGGCCACGATCTGAAACGCCTGGGCCCCGAAGCTGTCGTGCGCAACGTGATACGGATAATCCCCCACGAATACTATCACAGAAACAACATGGCCAATGACATCGCGCTGCTTGAGCTGGACCAACCTGTCCAGTGCAGCTACTACATCCAGCTCGCCTGCGTGCCCGATGCCTCGCTGCGAGTGTCAGAGCTCACAGACTGCTATGTCAGTGGCTGGGGACACATGGGGCTGAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023986-'3-1,'3-0,5-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(20.8=74.6)
C2:
PF0008921=Trypsin=FE(37.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGTGCTGCTGCTGCC
R:
GTAGCTGCACTGGACAGGTTG
Band lengths:
247-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]