GgaEX6004377 @ galGal4
Exon Skipping
Gene
ENSGALG00000016138 | DSCAM
Description
Down syndrome cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:3039]
Coordinates
chr1:107740164-107753226:-
Coord C1 exon
chr1:107752948-107753226
Coord A exon
chr1:107745069-107745188
Coord C2 exon
chr1:107740164-107740337
Length
120 bp
Sequences
Splice sites
3' ss Seq
TCTTTTGCTTCCTCCTGCAGTGC
3' ss Score
10.84
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
TTCCTCCTTTTATTCAGCCTTTTGAGTTCCCAAGGTTCTCCATCGGGCAGCGGGTCTTCATTCCCTGTGTGGTTGTCTCTGGAGATCTGCCCATCACCATCACCTGGCAGAAGGACGGCAGGCCCATCCCAGCCAGCCTGGGGGTGACCATTGACAACATCGACTTCACCAGCTCCTTACGGATTTCTAATCTTTCGCTGATGCACAATGGGAATTATACCTGTATAGCTAGAAATGATGCAGCAGCTGTGGAGCACCAAAGCCAATTAATTGTGAGAG
Seq A exon
TGCCCCCTAGGTTTGTGGTTCAGCCAAGTGACCAGGATGGGATATATGGAAAAGCTGTAATTCTCAACTGCTCTGCAGAGGGTTATCCTGTTCCTACCATTGTCTGGAAGTACTCAAAAG
Seq C2 exon
GTGCCGGGGTTCCTCAGTTCCAGCCAATTGCACTGAATGGTCGTATCCAGCTTCTCACAAATGGCTCCTTGCTGATTAAACACGTGCTAGAAGAAGACAGTGGATACTACCTCTGCAAGGTCAGCAATGATGTGGGAGCAGACGTCAGCAAGTCCATGTACCTCACTGTTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016138-'14-14,'14-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(0.1=0.0),PF0767911=I-set=WD(100=96.8)
A:
PF0767911=I-set=PU(40.0=92.7)
C2:
PF0767911=I-set=PD(58.9=94.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCACCAGCTCCTTACGGA
R:
TGCTCCCACATCATTGCTGAC
Band lengths:
257-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]