RnoEX6056694 @ rn6
Exon Skipping
Gene
ENSRNOG00000027992 | Dscam
Description
DS cell adhesion molecule [Source:RGD Symbol;Acc:619992]
Coordinates
chr11:37189208-37221548:-
Coord C1 exon
chr11:37221310-37221548
Coord A exon
chr11:37213191-37213310
Coord C2 exon
chr11:37189208-37189381
Length
120 bp
Sequences
Splice sites
3' ss Seq
GACAACATTTCTCTTTTCAGTTC
3' ss Score
9.33
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
ACTGAATCAGCGGGTCTTCATCCCATGTGTGGTGGTCTCGGGGGACTTACCCATCACCATCACCTGGCAGAAGGATGGCCGGCCGATTCCAGCAAGCCTCGGTGTAACCATCGACAACATCGACTTCACCAGCTCCCTGAGGATCTCCAACCTCTCACTGATGCACAACGGGAATTACACCTGCATCGCGCGGAACGAGGCGGCCGCCGTGGAACACCAGAGCCAGCTGATTGTAAGAG
Seq A exon
TTCCCCCTAAGTTCGTGGTCCAGCCCCGGGACCAGGATGGGATCTATGGCAAAGCAGTGATTCTCAATTGCTCTGCAGAGGGTTATCCTGTGCCTACAATTGTGTGGAAATTCTCAAAAG
Seq C2 exon
GTGCTGGGGTCCCCCAGTTCCAGCCAATTGCCCTGAATGGCAGAATCCAGGTCCTGAGTAATGGCTCACTCTTGATCAAGCATGTTGTGGAAGAAGACAGTGGCTACTACCTCTGCAAGGTCAGCAACGATGTGGGCGCAGACGTCAGCAAGTCCATGTACCTCACGGTGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027992-'13-10,'13-9,14-10=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(85.7=96.3)
A:
PF0767911=I-set=PU(40.0=92.7)
C2:
PF0767911=I-set=PD(58.9=94.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTCCCTGAGGATCTCCAA
R:
CATCGTTGCTGACCTTGCAGA
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]