HsaEX6006211 @ hg19
Exon Skipping
Gene
ENSG00000171587 | DSCAM
Description
Down syndrome cell adhesion molecule [Source:HGNC Symbol;Acc:3039]
Coordinates
chr21:41648024-41684286:-
Coord C1 exon
chr21:41684008-41684286
Coord A exon
chr21:41667982-41668101
Coord C2 exon
chr21:41648024-41648197
Length
120 bp
Sequences
Splice sites
3' ss Seq
TGACATTTCTCTCTTTTCAGTTC
3' ss Score
10.97
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
TTCCGCCTTTCATACAACCCTTTGAGTTTCCAAGATTCTCCATTGGGCAGCGGGTCTTCATCCCCTGTGTTGTGGTCTCAGGGGACTTACCCATCACGATCACCTGGCAGAAGGATGGCCGGCCAATCCCTGGGAGCCTTGGGGTGACCATTGACAATATTGACTTCACGAGCTCCTTGAGGATTTCCAATCTCTCGCTCATGCACAATGGGAATTACACCTGCATAGCCCGGAATGAGGCCGCCGCTGTGGAGCACCAAAGCCAGTTGATTGTCAGAG
Seq A exon
TTCCTCCCAAGTTTGTGGTTCAGCCACGGGACCAGGACGGGATTTATGGCAAAGCAGTCATCCTCAATTGTTCTGCTGAGGGTTACCCTGTACCTACCATCGTGTGGAAATTCTCTAAAG
Seq C2 exon
GTGCTGGGGTTCCCCAGTTCCAGCCAATTGCCCTAAATGGCCGAATCCAAGTTCTCAGCAATGGGTCGTTGCTGATCAAGCATGTCGTGGAGGAAGACAGTGGCTACTACCTCTGCAAGGTCAGCAACGATGTGGGCGCAGACGTCAGCAAGTCCATGTACCTCACGGTTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171587-'9-12,'9-11,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(0.1=0.0),PF0767911=I-set=WD(100=96.8)
A:
PF0767911=I-set=PU(40.0=92.7)
C2:
PF0767911=I-set=PD(58.9=94.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGTGGTCTCAGGGGACTT
R:
CAATTGGCTGGAACTGGGGAA
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)