BtaEX6003658 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004754 | DSCAM
Description
Down syndrome cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:3039]
Coordinates
chr1:141885285-141932129:-
Coord C1 exon
chr1:141931851-141932129
Coord A exon
chr1:141914443-141914562
Coord C2 exon
chr1:141885285-141885458
Length
120 bp
Sequences
Splice sites
3' ss Seq
GACATTTCTCTCTTTTTCAGTTC
3' ss Score
11.48
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
TTCCACCTTTTATCCAGCCTTTTGAGTTTCCAAGGTTCTCCATCGGACAGCGGGTCTTCATCCCGTGCGTTGTGGTCTCAGGGGACTTACCCATCACCATCACCTGGCAGAAAGATGGCCGGCCAATCCCAGCAAGCCTCGGGGTGACCATTGACAACATTGACTTCACAAGCTCCTTAAGGATTTCCAATCTTTCCCTGATGCACAATGGGAATTATACCTGCATAGCCCGCAATGAGGCAGCAGCTGTGGAGCACCAAAGCCAGCTAATTGTGAGAG
Seq A exon
TTCCTCCCAAGTTTGTGGTTCAACCACGGGACCAGGATGGGATTTATGGCAAGGCTGTCATCCTCAATTGCTCAGCTGAGGGTTACCCTGTACCCACCATCGTGTGGAAATTCTCTAAAG
Seq C2 exon
GTGCTGGGGTTCCCCAGTTCCAACCGATTGCCCTGAATGGCCGAATTCAGGTCCTCAGCAATGGGTCTCTGTTGATCAAGCACGTGGTGGAAGAAGACAGTGGCTACTACCTGTGCAAGGTCAGCAACGATGTGGGCGCGGACGTCAGCAAGTCCATGTACCTCACGGTGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004754-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(0.1=0.0),PF0767911=I-set=WD(100=96.8)
A:
PF0767911=I-set=PU(40.0=92.7)
C2:
PF0767911=I-set=PD(58.9=94.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGTCTCAGGGGACTTACC
R:
CATTCAGGGCAATCGGTTGGA
Band lengths:
248-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]