DreEX0028393 @ danRer10
Exon Skipping
Gene
ENSDARG00000028118 | dscamb
Description
Down syndrome cell adhesion molecule b [Source:ZFIN;Acc:ZDB-GENE-031118-67]
Coordinates
chr15:6219453-6229838:-
Coord C1 exon
chr15:6229560-6229838
Coord A exon
chr15:6228658-6228777
Coord C2 exon
chr15:6219453-6219632
Length
120 bp
Sequences
Splice sites
3' ss Seq
TCTTTGTTTTTTTTGCATAGTTC
3' ss Score
7.6
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
TGCCCCCTCTTATCCAACACTCCGACTCTCAGAGTGCTTCCATTGGTCAGCGTGTCTTCATCCCATGTGTGGTCATATCCGGCGACCTGCCCATGTCTATAACCTGGCACAAAGATGGACGACCAATCAACGCCAGCCTGGGTGTCACCATCGACAACATAGACTTCACCAGCTCACTGCGCATTTCAAACTTGTCGGAAATTCATAATGGCAGTTACACCTGCATCGCCCGGAATGAAGCTGCAGCCGTCGAACATAGCATACAGCTCATCGTTAAAG
Seq A exon
TTCCACCACATTTTGAGGTTCAGCCAAAAGACCAGGACGGCATATATGGGAAATCAGTTACCTTGAATTGTTCGGCAAAGGGAAATCCAATCCCCACTATAGTGTGGAACCACTCAAAAG
Seq C2 exon
GTGCTGGCGTTCCTCAGTTCCAGCCCATTGCCTTGAATTCTGGCTCCCGCGTCCAGCTCCTGGAGAACGGCTCTCTGCTCATAAAACACGTCCTGGAGGAAGATGCTGGATTTTATCTGTGCAAGGTCAGCAATGACGTGGGAGCCGATATCAGCAAGAGCATGTACCTCACCGTTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028118-'9-11,'9-9,10-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126033=DUF3770=PD(49.6=64.5),PF0767911=I-set=WD(100=97.8)
A:
PF0767911=I-set=PU(39.2=92.7)
C2:
PF0767911=I-set=PD(59.8=95.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGCATTTCAAACTTGTCGG
R:
TGATATCGGCTCCCACGTCAT
Band lengths:
255-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]