MmuEX6063644 @ mm9
Exon Skipping
Gene
ENSMUSG00000050272 | Dscam
Description
Down syndrome cell adhesion molecule [Source:MGI Symbol;Acc:MGI:1196281]
Coordinates
chr16:96994012-97023064:-
Coord C1 exon
chr16:97022786-97023064
Coord A exon
chr16:97012499-97012618
Coord C2 exon
chr16:96994012-96994185
Length
120 bp
Sequences
Splice sites
3' ss Seq
GACAACATCTCTCTTTTCAGTTC
3' ss Score
9.19
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
TTCCACCTTTCATCCAACCTTTTGAGTTCCCAAGATTCTCCATCGGGCAGCGGGTTTTCATCCCATGTGTGGTGGTCTCAGGGGACTTACCCATCACCATCACCTGGCAGAAGGATGGCCGGCCAATTCCAGCAAGCCTCGGAGTAACCATTGACAACATTGACTTCACCAGCTCCCTGAGGATCTCCAACCTCTCCCTAATGCACAATGGGAATTACACCTGCATTGCGAGAAACGAGGCAGCAGCCGTGGAACACCAGAGTCAGCTGATTGTGAGAG
Seq A exon
TTCCCCCTAAGTTCGTGGTACAGCCCCGGGACCAGGACGGGATCTATGGCAAAGCAGTGATTCTCAATTGCTCTGCAGAGGGTTATCCTGTGCCTACAATTGTGTGGAAATTCTCAAAAG
Seq C2 exon
GTGCTGGGGTCCCCCAGTTCCAGCCAATTGCCTTGAATGGCCGAATCCAGGTCCTGAGTAATGGCTCACTCTTGATCAAGCATGTTGTAGAAGAAGACAGTGGCTACTACCTCTGCAAGGTCAGCAACGATGTGGGCGCAGACGTCAGCAAGTCCATGTACCTCACAGTGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050272-'11-9,'11-8,12-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(0.1=0.0),PF0767911=I-set=WD(100=96.8)
A:
PF0767911=I-set=PU(40.0=92.7)
C2:
PF0767911=I-set=PD(58.9=94.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACTTCACCAGCTCCCTGA
R:
ATCGTTGCTGACCTTGCAGAG
Band lengths:
251-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: