BtaEX6058342 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016692 | DSCAML1
Description
Down syndrome cell adhesion molecule like 1 [Source:HGNC Symbol;Acc:HGNC:14656]
Coordinates
chr15:28597448-28599352:-
Coord C1 exon
chr15:28599074-28599352
Coord A exon
chr15:28598544-28598663
Coord C2 exon
chr15:28597448-28597624
Length
120 bp
Sequences
Splice sites
3' ss Seq
CACCCCCCCTCTTTCTGCAGTGC
3' ss Score
10.37
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
TGCCCCCTCTCATCCAGCCCTTCGAGTTCCCGCCTGCCTCCATCGGCCAGCTGCTCTACATCCCCTGTGTGGTGTCCTCGGGGGACATGCCCATCCGCATCACGTGGAGGAAAGACGGGCAGGTGATCATCTCGGGCTCGGGCGTGACCATCGAGAGCAAGGAGTTCATGAGCTCCCTGCAGATCTCCAGCGTCTCCCTCAAGCACAACGGCAACTATACGTGCATAGCCAGCAACGCAGCGGCCACTGTGAGCAGGGAGCGCCAGCTCATTGTGCGTG
Seq A exon
TGCCCCCTCGATTCGTGGTGCAGCCCAACAACCAGGATGGCATCTATGGCAAGGCTGGTGTGCTCAACTGCTCGGTGGATGGCTACCCCCCACCCAAGGTCATGTGGAAGCATGCCAAAG
Seq C2 exon
GGAGCGGGAACCCCCAGCAATACCACCCAGTGCCCCTCACCGGCCGCATCCAGATCCTGCCCAACAGCTCGCTGCTGATCCGCCACGTCCTGGAAGAGGACATCGGCTACTACCTCTGCCAGGCCAGCAACGGCGTGGGCACCGACATTAGCAAGTCCATGTTCCTCACCGTGAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016692-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.171 C2=0.083
Domain overlap (PFAM):
C1:
PF0767911=I-set=WD(100=94.7)
A:
PF0767911=I-set=PU(39.6=92.7)
C2:
PF0767911=I-set=PD(59.4=95.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCATCGAGAGCAAGGAGT
R:
TAGCCGATGTCCTCTTCCAGG
Band lengths:
244-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]